The following links will provide you with all of John Owen's works with the exception of Volume 1 of his Hebrews commentary, The Reason of Faith, and Causes, Ways, and Means, of understanding the Mind of God. At least, I think that is all that is missing. It includes Theologoumena Pantodapa, the Latin original of Biblical Theology for all you Latin scholars out there (i.e., Fred). In any event, here is a bunch of free John Owen for you all:
From the Thomas Russell edited set of Owen's Works:
Volume 4: A Discourse of the Work of the Holy Spirit in Prayer; Two Discourses Concerning the Holy Spirit and His Work; Of the Divine Original of the Scriptures; Of the Integrity and Purity of the Hebrew and Greek Text of the Scriptures; Pro Sacris Scripturis Adversus Hujus Temporis Fanaticos.
Volume 5: Two Short Catechisms; Theomaxia Autexousiastike: or, A Display of Arminianism; Salus Electorum, Sanguis Jesu: or, The Death of Death in the Death of Christ; Of the Death of Christ.
Volume 6: The Doctrine of the Saint’s Perseverance Explained and Confirmed.
Volume 7: The Doctrine of the Saint’s Perseverance Explained and Confirmed; The Mortification of Sin in Believers; The Nature and Power of Temptation.
Volume 9: A Continuation of Vindiciæ Evangelicæ: or, The Mystery of the Gospel Vindicated; Of the Death of Christ, and of Justification; A Review of the Annotations of Hugo Grotius; A Dissertation on Divine Justice.
Volume 10: Communion with God the Father, Son, and Holy Ghost; The Same Subject Vindicated; A Brief Declaration and Vindication of the Doctrine of the Trinity; Of the Person and Satisfaction of Christ.
Volume 11: The Doctrine of Justification by Faith; Gospel Grounds and Evidences of the Faith of God’s Elect.
Volume 12: Christologia: or, A Declaration of the Glorious Mystery of the Person of Christ; Meditations and Discourses on the Glory of Christ, in His Person, Office, and Grace.
Volume 13: The Nature, Power, Deceit, and Prevalency of the Remainders of Indwelling Sin in Believers; The Grace and Duty of Being Spiritually Minded.
Volume 14: A Practical Exposition of the Hundred and Thirtieth Psalm; A Treatise of the Dominion of Sin and Grace; A Humble Testimony unto the Goodness and Severity of God in His Dealing with Sinful Churches and Nations.
Volume 16: Sermons.
Volume 17: Thirteen Sermons Preached on Various Occasions; Twenty-Five Discourses Suitable to the Lord’s Supper; The Nature and Causes of Apostasy; Some Considerations about Union Among Protestants; The State and Fate of the Protestant Religion.
Volume 18: Animadversions on a Treatise Entitled Fiat Lux; A Vindication of the Animadversions on Fiat Lux; The Church of Rome No Safe Guide.
Volume 19: The Duty of Pastors and People Distinguished; Eshcol, A Cluster of Fruit of Canaan; Treatises on Schism; Questions Concerning the Power of the Supreme Magistrate about Religion, Proposed and Resolved; A Discourse Concerning Liturgies; A Short Catechism; A Vindication of the Nonconformists from the Charge of Schism.
Volume 20: An Inquiry into the Original, Nature, Institution, Power, Order, and Communion of Evangelical Churches; An Answer to Dr. Stillingfleet’s Book of the Unreasonableness of Separation; The True Nature of a Gospel Church and Its Government.
Volume 21: A Discourse Concerning Love, Church-Peace, and Unity; A Survey of a Discourse Concerning Ecclesiastical Polity; Tracts, and Orationes Sex Oxonii Habitæ.
From the William Goold edited set:
Volume 1: Life of Owen, by Andrew Thomson; On the Person of Christ; Meditations and Discourses on the Glory of Christ; Meditations and Discourses on the Glory of Christ applied to Sinners and Saints; Two Short Catechisms.
Volume 2: On Communion with God; Vindication of the Preceding Discourse; Vindication of the Doctrine of the Trinity.
Volume 3: Discourse on the Holy Spirit.
Volume 5: The Doctrine of Justification by Faith; Evidences of the Faith of God's Elect.
Volume 6: On the Mortification of Sin; On Temptation; On Indwelling Sin in Believers; Exposition of Psalm 130.
Volume 7: The Nature and Causes of Apostasy; On Spiritual-Mindedness; On the Dominion of Sin and Grace.
Volume 8: Sermons.
Volume 11: The Doctrine of the Saints' Perseverance Explained and Confirmed.
Volume 12: Vindicae Evangelicae: or, the Mystery of the Gospel Vindicated; O the Death of Christ, and of Justification; A Review of the Annotations of Grotius.
Volume 15: Discourse concerning Liturgies; Discourse concerning Evangelical Love, Church Peace, and Unity; Inquiry concerning Evangelical Churches; Answer to Dr. Stillingfleet on the unreasonableness of Separation; Instruction in the Worship of God.
Volume 16: The Nature of a Gospel Church; Tracts on Excommunication,Church Censures, Baptism, etc.; On the Divine Original of the Scriptures; Posthumous Sermons.
Volume 17: Theologoumena Pantodapa (Biblical Theology).
Volume 2 of the Hebrews Commentary (Volume 19 of his Works)
Volume 3 of the Hebrews Commentary (Volume 20 of his Works)
Volume 4 of the Hebrews Commentary (Volume 21 of his Works)
Volume 5 of the Hebrews Commentary (Volume 22 of his Works)
Volume 6 of the Hebrews Commentary (Volume 23 of his Works)
Volume 7 of the Hebrews Commentary (Volume 24 of his Works)
The Correspondence of John Owen
The Oxford Orations of John Owen
Sermons of John Owen
Happy Reading!
From the Thomas Russell edited set of Owen's Works:
Volume 4: A Discourse of the Work of the Holy Spirit in Prayer; Two Discourses Concerning the Holy Spirit and His Work; Of the Divine Original of the Scriptures; Of the Integrity and Purity of the Hebrew and Greek Text of the Scriptures; Pro Sacris Scripturis Adversus Hujus Temporis Fanaticos.
Volume 5: Two Short Catechisms; Theomaxia Autexousiastike: or, A Display of Arminianism; Salus Electorum, Sanguis Jesu: or, The Death of Death in the Death of Christ; Of the Death of Christ.
Volume 6: The Doctrine of the Saint’s Perseverance Explained and Confirmed.
Volume 7: The Doctrine of the Saint’s Perseverance Explained and Confirmed; The Mortification of Sin in Believers; The Nature and Power of Temptation.
Volume 9: A Continuation of Vindiciæ Evangelicæ: or, The Mystery of the Gospel Vindicated; Of the Death of Christ, and of Justification; A Review of the Annotations of Hugo Grotius; A Dissertation on Divine Justice.
Volume 10: Communion with God the Father, Son, and Holy Ghost; The Same Subject Vindicated; A Brief Declaration and Vindication of the Doctrine of the Trinity; Of the Person and Satisfaction of Christ.
Volume 11: The Doctrine of Justification by Faith; Gospel Grounds and Evidences of the Faith of God’s Elect.
Volume 12: Christologia: or, A Declaration of the Glorious Mystery of the Person of Christ; Meditations and Discourses on the Glory of Christ, in His Person, Office, and Grace.
Volume 13: The Nature, Power, Deceit, and Prevalency of the Remainders of Indwelling Sin in Believers; The Grace and Duty of Being Spiritually Minded.
Volume 14: A Practical Exposition of the Hundred and Thirtieth Psalm; A Treatise of the Dominion of Sin and Grace; A Humble Testimony unto the Goodness and Severity of God in His Dealing with Sinful Churches and Nations.
Volume 16: Sermons.
Volume 17: Thirteen Sermons Preached on Various Occasions; Twenty-Five Discourses Suitable to the Lord’s Supper; The Nature and Causes of Apostasy; Some Considerations about Union Among Protestants; The State and Fate of the Protestant Religion.
Volume 18: Animadversions on a Treatise Entitled Fiat Lux; A Vindication of the Animadversions on Fiat Lux; The Church of Rome No Safe Guide.
Volume 19: The Duty of Pastors and People Distinguished; Eshcol, A Cluster of Fruit of Canaan; Treatises on Schism; Questions Concerning the Power of the Supreme Magistrate about Religion, Proposed and Resolved; A Discourse Concerning Liturgies; A Short Catechism; A Vindication of the Nonconformists from the Charge of Schism.
Volume 20: An Inquiry into the Original, Nature, Institution, Power, Order, and Communion of Evangelical Churches; An Answer to Dr. Stillingfleet’s Book of the Unreasonableness of Separation; The True Nature of a Gospel Church and Its Government.
Volume 21: A Discourse Concerning Love, Church-Peace, and Unity; A Survey of a Discourse Concerning Ecclesiastical Polity; Tracts, and Orationes Sex Oxonii Habitæ.
From the William Goold edited set:
Volume 1: Life of Owen, by Andrew Thomson; On the Person of Christ; Meditations and Discourses on the Glory of Christ; Meditations and Discourses on the Glory of Christ applied to Sinners and Saints; Two Short Catechisms.
Volume 2: On Communion with God; Vindication of the Preceding Discourse; Vindication of the Doctrine of the Trinity.
Volume 3: Discourse on the Holy Spirit.
Volume 5: The Doctrine of Justification by Faith; Evidences of the Faith of God's Elect.
Volume 6: On the Mortification of Sin; On Temptation; On Indwelling Sin in Believers; Exposition of Psalm 130.
Volume 7: The Nature and Causes of Apostasy; On Spiritual-Mindedness; On the Dominion of Sin and Grace.
Volume 8: Sermons.
Volume 11: The Doctrine of the Saints' Perseverance Explained and Confirmed.
Volume 12: Vindicae Evangelicae: or, the Mystery of the Gospel Vindicated; O the Death of Christ, and of Justification; A Review of the Annotations of Grotius.
Volume 15: Discourse concerning Liturgies; Discourse concerning Evangelical Love, Church Peace, and Unity; Inquiry concerning Evangelical Churches; Answer to Dr. Stillingfleet on the unreasonableness of Separation; Instruction in the Worship of God.
Volume 16: The Nature of a Gospel Church; Tracts on Excommunication,Church Censures, Baptism, etc.; On the Divine Original of the Scriptures; Posthumous Sermons.
Volume 17: Theologoumena Pantodapa (Biblical Theology).
Volume 2 of the Hebrews Commentary (Volume 19 of his Works)
Volume 3 of the Hebrews Commentary (Volume 20 of his Works)
Volume 4 of the Hebrews Commentary (Volume 21 of his Works)
Volume 5 of the Hebrews Commentary (Volume 22 of his Works)
Volume 6 of the Hebrews Commentary (Volume 23 of his Works)
Volume 7 of the Hebrews Commentary (Volume 24 of his Works)
The Correspondence of John Owen
The Oxford Orations of John Owen
Sermons of John Owen
Happy Reading!
Also see 
